Publication

**Summary: **(click each one with
hyperlink)

84
Published or Accepted Referred Journal Papers

24
Conference Proceeding Papers

*Parallel High-Order
Methods for Deterministic and Stochastic CFD and MHD Problems*, Advisor: George Em Karniadakis, Brown University,
2007.

**G. Lin**, G. Karniadakis, **Stochastic
Systems** Chapter in **Encyclopedia
of Applied and Computational Mathematics, **ed. Bjorn Engquist, Springer,
New York, 2015.

**G. Lin**, **Big Data
Application in Power Grid Systems** chapter in **CRC
Handbook on Big Data**, CRC Press, Taylor & Francis Group, 2016

**84
Published or Accepted Journal Papers and 13 Submitted Journal Papers:**

**(1) 84 Published or Accepted Journal Papers**

**2004**

[P1]
**G. Lin**,
C.-H. Su and G.E. Karniadakis, The stochastic
piston problem, Proceedings of the National Academy of Sciences of the
United States of America, 101(45):15840-15845, 2004. PDF

**2006**

[P2]
**G. Lin**,
C.-H. Su and G.E. Karniadakis, Predicting shock
dynamics in the presence of uncertainties, Journal of Computational
Physics, special issue in stochastic uncertainty prediction, 217(1) 260-276,
2006. PDF

[P3]
**G. Lin** and G.E.
Karniadakis, A discontinuous Galerkin method for two-temperature plasmas, Computer
Methods in Applied Mechanics and Engineering, special issue in Discontinuous
Galerkin Methods. 195(25-28): 3504-3527, 2006. PDF

[P4]
**G. Lin** and
L. Grinberg and G.E. Karniadakis, Numerical
studies of the stochastic Korteweg-de Vries equation, Journal of
Computational Physics, 213(2): 676-703, 2006. PDF

**2007**

[P5]
**G. Lin**,
C.-H. Su and G.E. Karniadakis, Random Roughness
Enhances Lift in Supersonic Flow, Physical Review Letters, 99:104501,
2007. PDF

[P6]
**G. Lin**, X.
Wan, C.-H. Su and G.E. Karniadakis, Stochastic
computational fluid mechanics, IEEE Computing in Science and Engineering
(CiSE), 9:21-29, 2007. PDF

**2008**

[P7]
**G. Lin**, C.-H.
Su and G.E. Karniadakis, Stochastic modeling of
random roughness in shock scattering problems: Theory and simulations,
Comput. Methods Appl. Math. Eng., 197(43-44): 3420-3434, 2008. PDF

**2009**

[P8]
Z. Xu and **G Lin**. Hierarchical reconstruction for spectral/hp element methods for solving hyperbolic conservation laws,
Acta Mathematica Scientia, 29(6): 1737-1748, 2009. PDF

[P9]
W. Wu, **G. Lin**, Basic
function scheme of polynomial type, Applied Mathematics and Mechanics,
30(9): 1091–1103, 2009. PDF

[P10]
**G. Lin** and
G.E. Karniadakis, Sensitivity Analysis and
Stochastic Simulations of Non-equilibrium Plasma Flow,
International Journal for Numerical Methods in Engineering,
80(6-7): 738 – 766, 2009. PDF

[P11]
**G. Lin*** and A.
M. Tartakovsky, An efficient, high-order
probabilistic collocation method on sparse grids for three-dimensional flow and
solute transport in randomly heterogeneous porous media, Advances in Water
Resources, 32(5):
712-722, 2009. PDF

**2010**

[P12]
**G. Lin*** and A. M. Tartakovsky, Numerical studies of three-dimensional stochastic Darcy's
equation and stochastic advection-diffusion-dispersion equation, Journal of
Scientific Computing, 43(1): 92-117, 2010. PDF

[P13]
**G. Lin***, D. M. Tartakovsky, and A. M.
Tartakovsky, Uncertainty quantification via
random domain decomposition and probabilistic collocation on sparse grids,
Journal of Computational Physics, 229(19): 6995-7012, 2010. PDF

**2011**

[P14]
D. Mei, **G. Lin**. Effects
of heat and mass transfer on the reaction kinetics of CO oxidation on the
RuO2(110) catalyst, Catalysis Today, 165: 56-63, 2011. PDF

[P15]
Z. Xu, Y.
Liu, H. Du, **G. Lin**, and CW. Shu, Point-wise Hierarchical Reconstruction for
Discontinuous Galerkin and Finite Volume Methods for Solving Conservation Laws,
Journal of Computational Physics, 230 (17): 6843-6865, 2011. PDF

**2012**

[P16]
X. Yang, M. Choi,
**G. Lin**, G.E. Karniadakis, Adaptive ANOVA Decomposition of Incompressible and
Compressible Flows, Journal of Computational Physics, 231(4): 1587–1614, 2012. PDF

[P17]
A. Balter, **G. Lin**, and A.M. Tartakovsky, The Effect of Nonlinearity in Hybrid Kinetic Monte
Carlo-Continuum models, Physical Review E, 85: 016707, 2012. PDF

[P18]
B. Yang, Y. Qian, **G. Lin**, R. Leung, Y. Zhang, Some
issues in uncertainty quantification and parameter tuning: a case study of
convective parameterization scheme in the WRF regional climate model,
Atmospheric Chemistry and Physics, 12(5): 2409-2427, 2012. PDF

[P19]
Z. Hou, M Huang,
LYR Leung, **G. Lin**, and DM Ricciuto, Sensitivity of
Surface Flux Simulations to Hydrologic Parameters Based on an Uncertainty
Quantification Framework Applied to the Community Land Model, Journal of
Geophysical Research. D. (Atmospheres), 117(D15):
D15108, 2012*. *PDF

**2013**

[P20]
I. Bright, **G. Lin**, N. Kutz, Compressive Sensing Based Machine Learning Strategy
for Characterizing the Flow around a Cylinder with Limited Pressure
Measurements, Physics of Fluids, 25: 127102, 2013. PDF

[P21]
Yang B, Y
Qian, **G Lin**, LYR Leung, PJ Rasch, GJ
Zhang, SA McFarlane, C Zhao, Y Zhang, H Wang, M Wang, and X Liu, Uncertainty Quantification and Parameter Tuning in the
CAM5 Zhang-McFarlane Convection Scheme and Physical Impact of Improved
Convection on the Global Circulation and Climate, Journal of Geophysical
Research. D. (Atmospheres), 118: 395-415, 2013. PDF

[P22]
Bilionis I, N.
Zabaras, B Konomi, and **G Lin**. Multi-output separable Gaussian process: Towards an
efficient, fully Bayesian paradigm for uncertainty quantification, Journal
of Computational Physics, 241: 212-239, 2013. PDF

[P23]
X. Shi, **G. Lin***, J. Zhou, D. Fedosov, A Lattice
Boltzmann Fictitious Domain Method for Modeling Red Blood Cell Deformation and
Multiple-Cell Hydrodynamic Interaction in Flow, International Journal for
Numerical Methods in fluids, 72 (8): 895-911, 2013. PDF

[P24]
Z. Zhang, X.
Yang, **G. Lin**, G. Karniadakis, Numerical solution of the Stratonovich- and
Ito-Euler equations: Application to the stochastic piston problem, Journal
of Computational Physics, 236: 15-27, 2013. PDF

[P25]
K. Hui, **G Lin***, W Pan, Understanding the Mechanisms of Sickle Cell Disease
by Simulations with a Discrete Particle Model, Computational Science &
Discovery, 6(1): 015004, 2013. PDF

[P26]
Ryu S, **G Lin**, X Sun, MA Khaleel, and D
Li, Adaptive
Multiple Super Fast Simulated Annealing for
Stochastic Image Reconstruction, International Journal of Theoretical and
Applied Multiscale Mechanics, 2(4): 287-297, 2013. PDF

[P27]
J. Bao, Z.
Xu, **G. Lin**, Y. Fang, Evaluating the impact of aquifer layer properties on
geo-mechanical response during CO2 geological sequestration, Computers
& Geosciences, 54: 28-37, 2013. PDF

[P28]
Z. Hou, DW Engel,
**G Lin**, Y Fang, and Z Fang, An Uncertainty Quantification Framework for Studying
the Effect of Spatial Heterogeneity in Reservoir Permeability on CO2
Sequestration, Mathematical Geosciences, 45(7): 799-817, 2013. PDF

[P29]
X. Wan, **G.
Lin**, Hybrid parallel computing of minimum
action method, Parallel Computing, 39: 638-651, 2013. PDF

[P30]
J. Bao, Z.
Hou, Y. Fang, H. Ren, **G. Lin**, Uncertainty quantification for evaluating impacts of
caprock and reservoir properties on geomechanical responses during geologic CO2
sequestration, Greenhouse Gases: Science and Technology, 3(5): 338-358,
2013. PDF

[P31]
C. Zhao, X.
Liu, Y. Qian, J. Yoon, Z. Hou, **G. Lin**,
S. McFarlane, H. Wang, B. Yang, P.-L. Ma, H. Yan, J. Bao, A Sensitivity Study of Radiative Fluxes at the Top
of Atmosphere to Cloud-Microphysics and Aerosol Parameters in the Community
Atmosphere Model CAM5, Atmos. Chem. Phys., 13: 10969-10987, 2013. PDF

**2014**

[P32]
G. Xu, **G. Lin***, J. Liu, Rare Event Simulation for Stochastic Korteweg-de
Vries Equation, SIAM/ASA Journal on Uncertainty Quantification, 2 (1):
698-716, 2014. PDF

[P33]
Guo Z, M
Wang, Y Qian, VE Larson, SJ Ghan, M Ovchinnikov, P Bogenschutz, C Zhao, **G. Lin**, and T Zhou, A Sensitivity Analysis of Cloud Properties to
CLUBB Parameters in the Single Column Community Atmosphere Model (SCAM5),
Journal of Advances in Modeling Earth Systems, 6 (3): 829-858, 2014. PDF

[P34]
M. J. Del
Razo, W. Pan, H. Qian, **G. Lin**, Fluorescence Correlation Spectroscopy and Nonlinear
Stochastic Reaction-Diffusion, Journal of Physical Chemistry B, 118 (25):
7037-7046, 2014. PDF

[P35]
**G. Lin***, J. Bao, Z. Xu, A three-dimensional phase field model coupled with
lattice kinetics solver for modeling crystal growth in furnaces with
accelerated crucible rotation and traveling magnetic field, Computers and
Fluids, 103: 204-214, 2014. PDF

[P36]
X. Shi, **G. Lin***, Modeling
the Sedimentation of Red Blood Cells in Flow under Strong External Magnetic
Body Force using a Lattice Boltzmann Fictitious Domain Method, Numer. Math.
Theor. Meth. Appl. 72014: 512-523, 2014. PDF

[P37]
**G. Lin***, J. Liu, F. Sadre-Marandi, A comparative study on the weak Galerkin,
discontinuous Galerkin, and mixed finite element methods, Journal of
Computational and Applied Mathematics, 273: 346-362, 2015. PDF

[P38]
Z. Zhang, X.
Hu, T.Y. Hou*, **G. Lin***, P. Yan, An adaptive ANOVA-based data-driven stochastic
method for elliptic PDE with random coefficients, Communications in
Computational Physics, 16: 571-598, 2014. PDF

[P39]
H. Yan, Y.
Qian, **G. Lin**, L.R. Leung, B. Yang,
Q. Fu, Parametric Sensitivity and Calibration for the
Kain-Fritsch Convective Parameterization Scheme in the WRF Model, Climate
Research, 59: 135-147, 2014. PDF

[P40]
F. Liang, Y.
Cheng, and **G Lin**, Simulated Stochastic Approximation Annealing for
Global Optimization with a Square-Root Cooling Schedule, Journal of the
American Statistical Association, 109(506): 847-863, 2014. PDF

[P41]
S. Shao, N.
Abdolrahim, D. F. Bahr, **G. Lin**, and
H.M. Zbib, Stochastic
Effects in Plasticity in Small Volumes, International Journal of
Plasticity, 52: 117-132, 2014. PDF

[P42]
Z. Hou, D.W.
Engel, D.H. Bacon, **G. Lin**, Y. Fang,
H. Ren, Z. Fang, Uncertainty Analyses of CO2
Plume Expansion subsequent to Wellbore CO2 Leakage into Aquifers,
International Journal of Greenhouse Gas Control, 27:69-80, 2014. PDF

[P43]
**G. Lin***, J. Liu, L. Mu, X. Ye, Weak Galerkin Finite
Element Methods for Darcy Flow: Anisotropy and Heterogeneity, Journal of
Computational Physics, 276: 422-437, 2014. PDF

[P44]
W. Li, **G. Lin***, D. Zhang, An Adaptive-ANOVA-based PCKF for
High-Dimensional Nonlinear Inverse Modeling, Journal of Computational
Physics, 258: 752–772, 2014. PDF

[P45]
D. Meng, Q.
Zhang, X. Gao, S. Wu, **G. Lin**, LipidMiner: a software
for automated identification and quantification of lipids from multiple liquid
chromatography-mass spectrometry data files, Rapid Communications in Mass
Spectrometry, 28 (8): 981-985, 2014. PDF

[P46]
D. Meng, B.
Zheng, **G. Lin***, M.L. Sushko, Numerical Solution of 3D Poisson-Nernst-Planck Equations
Coupled with Classical Density Functional Theory for Modeling Ion and Electron
Transport in Confined Environment, Communications in Computational Physics,
16(5): 1298-1322, 2014. PDF

[P47]
B. Konomi,
G. Karagiannis, A. Sarkar, X. Sun, **G.
Lin***, Bayesian Treed Multivariate
Gaussian Process with Adaptive Design: Application to a Carbon Capture Unit,
Technometrics, 56(2): 145–158, 2014. PDF

[P48]
G.
Karagiannis, **G. Lin***, Selection of Polynomial Chaos Bases via Bayesian
Model Uncertainty Methods with Applications to Sparse Approximation of PDEs
with Stochastic Inputs, Journal of Computational Physics, 259: 114–134,
2014. PDF

[P49]
**G. Lin***, J.
Bao, Z. Xu, A. M. Tartakovsky, and CH Henager, Jr., A Phase-Field Model Coupled with Lattice
Kinetics Solver for Modeling Crystal Growth in Furnaces, Communications in
Computational Physics, 15(1): 76-92, 2014. PDF

[P50]
Fang Z, Z
Hou, **G Lin**, DW Engel, Y Fang, and PW
Eslinger. Exploring the Effects of Data
Quality, Data Worth, and Redundancy of CO2 Saturation Data on Injection
Reservoir Characterization through PEST Inversion, Environmental Earth
Sciences, 71(7): 3025-3037, 2014. PDF

[P51]
**G. Lin***, M. Elizondo, S. Lu, X. Wan, Uncertainty Quantification in Dynamic Simulations
of Large-scale Power System Models using the High-Order Probabilistic
Collocation Method on Sparse Grids, International Journal for Uncertainty
Quantification, 4(3): 185-204, 2014. PDF

[P52]
S. Wang, S. Lu,
N. Zhou, **G. Lin**, M. Elizondo, M.A. Pai, Dynamic-feature Extraction,
Attribution and Reconstruction (DEAR) Method for Power System Model Reduction,
IEEE Transactions on Power Systems, 99: 1-11, 2014. PDF

[P53]
J. Wei, **G. Lin***, L. Jiang, Y. Efendiev, Analysis of Variance-based Mixed Multiscale
Finite Element Method and Applications in Stochastic Two-Phase Flows,
International Journal for Uncertainty Quantification, 4(6): 455-477, 2014. PDF

**2015**

[P54]
Z. Hao, **G. Lin**, Z. Sun, A high-order difference scheme for the
fractional sub-diffusion equation, International Journal of Computer
Mathematics, 16: 1-24, 2015. DOI:10.1080/00207160.2015.1109642 PDF

[P55]
B. Zhang, B.
Konomi, H. Sang, G. Karagiannis,** G. Lin***,
Full scale multi-output Gaussian
process emulator with nonseparable auto-covariance functions, Journal of Computational
Physics, 300: 623–642, 2015. PDF

[P56]
G.
Herschlag, S. Mitran, G. Lin, A consistent
hierarchy of generalized kinetic equation approximations to
the master equation applied to surface catalysis,
Journal of Chemical Physics, 142: 234703, 2015. PDF

[P57]
E. Sousa, **G. Lin***, U. Shumlak, Uncertainty Quantification of the GEM
Challenge Magnetic Reconnection Problem using the Multi-level Monte Carlo
Method, International Journal for Uncertainty Quantification, 5(4):
327-339, 2015. PDF

[P58]
B. Konomi, **G. Lin***, Low-Cost Multi-output Gaussian Process with
Application to Uncertainty Quantification, International Journal for
Uncertainty Quantification, 5(4): 375-392, 2015. PDF

[P59]
J. Li, **G. Lin**, X. Yang, A Frozen Gaussian Approximation-based Multi-level Particle Swarm Optimization for Seismic Inversion,
Journal of Computational Physics, 296: 58-71, 2015. PDF

[P60]
W. Li and **G. Lin***, Adaptive Importance Sampling
from Multimodal Distributions using Polynomial Chaos Surrogates and Gaussian
Mixture Proposal, Journal of Computational Physics, 294: 173-190, 2015. PDF

[P61]
Bao J, Z
Hou, Y Fang, H Ren, and **G. Lin**, Uncertainty quantification for evaluating the
impacts of fracture zone on pressure buildup and ground surface uplift during
geological CO2 sequestration, Greenhouse Gases: science and technology,
5(3):254-267, 2015. PDF

[P62]
R. N.
Ibragimov, **G. Lin**, Longitudinal Dimensions of Polygon-shaped Planetary
Waves, Journal of Applied Nonlinear Dynamics 4(2): 153-167, 2015. PDF

[P63]
W. Hao, Z.
Xu, C. Liu, **G. Lin**, A Fictitious Domain Method with a Hybrid Cell
Model for Simulating Motion of Cells in Fluid Flow, Journal of Computational
Physics, 280: 345-362, 2015. PDF

[P64]
G.
Karagiannis, B. Konomi, **G. Lin***, Mixed shrinkage prior procedure for basis
selection and global evaluation of gPC expansions in Bayesian framework:
Applications to elliptic SPDEs, Journal of Computational Physics, 284:
528-546, 2015. PDF

[P65]
R.N.
Ibragimov, **G. Lin**, Splitting phenomenon of a higher-order
shallow water theory associated with a longitudinal planetary waves,
Dynamics of Atmospheres and Oceans, 69: 1-11, 2015. PDF

[P66]
B. Konomi,
G. Karagiannis, **G. Lin**, On the Bayesian Treed Multivariate Gaussian
Process with Linear Model of Coregionalization, Journal of Statistical
Planning and Inference, 157-158: 1-15, 2015. PDF

**Current**

[P67]
Z. Hao, W. Cao
and **G. Lin*******, A second-order difference scheme for the time
fractional substantial diffusion equation, Journal of Computational and
Applied Mathematics, in press. PDF

[P68]
R.J.
Leveque, K. Waagan, F.I. Gonzalez, D. Rim, G. Lin, Generating
random earthquake events for probabilistic tsunami hazard assessment, Pure
and Applied Geophysics, 1-22, doi:10.1007/s00024-016-1357-1, 2016. PDF

[P69]
W. Li, **G. Lin***, B. Li, Inverse regression-based uncertainty
quantification algorithms for high-dimensional models in theory and practice,
Journal of Computational Physics, 321:259-278, 2016. PDF

[P70]
A. Biswas, **G. Lin**, X. Liu, H. Shen, Visualization of
Time-Varying Weather Ensembles Across Multiple Resolutions, IEEE Transactions
on Visualization and Computer Graphics, in press, 2016,
doi:10.1109/TVCG.2016.2598869. PDF

[P71]
J. Wang, X. Liu,
H. Shen, **G. Lin**, Multi-resolution Climate Ensemble parameter
analysis with nested parallel coordinates plots, IEEE Transactions on
Visualization and Computer Graphics, in press, 2016, doi/10.1109/TVCG.2016.2598830. PDF

[P72]
G.
Karagiannis, B. Konomi, F. Liang, **G. Lin**,
Parallel and Interacting Stochastic
Approximation Annealing for Global Optimization, *Journal of Computational and Graphical Statics*, 1-19, doi:*10.1007/s11222-016-9663-0*, 2016. PDF

[P73]
W. Guo, **G. Lin***, A. J. Christlieb, J. Qiu, An adaptive WENO collocation method for
differential equations with random coefficients, Mathematics, *4*(2),
29; doi:10.3390/math4020029, 2016. PDF

[P74]
Konomi, B.,
G. Karagiannis, K. Lai, **G. Lin**, Bayesian treed
Calibration: an application to Carbon capture with AX sorbent, ** Journal
of American Statistical Association**, ISSN: 0162-1459 (Print) 1537-274X
(Online), 2016. DOI: 10.1080/01621459.2016.1190279. PDF

[P75]
Q. Liao, **G. Lin***, Reduced basis ANOVA method for partial
differential equation with high-dimensional random inputs, Journal of
Computational Physics, 317: 148-164, 2016. PDF

[P76]
Z. Zhang, X.
Yang, **G. Lin***, POD-based constrained sensor placement and
field reconstruction from noisy wind measurement, Mathematics, 4, 26;
doi:10.3390/math4020026, 2016. PDF

[P77]
I. Bright, **G. Lin**, N. Kutz, Classification of Spatio-temporal
Data via Asynchronous sparse sampling: Application to flow around a cylinder,
SIAM Multiscale modeling and simulation, in press, 2016. PDF

[P78]
H. Wang, **G. Lin**, J. Li, Gaussian process surrogates for
failure detection: a Bayesian experimental design
approach, Journal of Computational Physics, 313: 247-259, 2016. PDF

[P79]
Z. Xu, R.
Tipireddy, **G. Lin**, Analytical Approximation and Numerical Studies of
One-dimensional Elliptic Equation with Random Coefficients, Applied
Mathematical Modelling, 2016; DOI:10.1016/j.apm.2015.12.041.
PDF

[P80]
Y. Sun, P. Sun,
B. Zheng, **G. Lin**, Error analysis of finite element method for
Poisson-Nernst-Planck equations, Journal of Computational and Applied
Mathematics, 301: 28-43, 2016. PDF

[P81]
H. Lei, X. Yang,
B. Zheng, **G. Lin**, N. Baker, Constructing Surrogate Models of Complex
Systems with Enhanced Sparsity: Quantifying the Influence of Conformational
Uncertainty in Biomolecular Solvation, *SIAM
Multiscale Modeling and Simulation*, 13(4): 1327-1353, 2016. PDF

[P82]
X. Yang, H. Lei,
N. Baker, **G. Lin***, Enhancing sparsity of Hermite
polynomial expansions by iterative rotations, Journal of Computational
Physics, 307: 94-09, 2016. PDF

[P83]
L. Li, Y.
Yang, **G. Lin**, The stabilization of BAM neural networks with
time-varying delays in the leakage terms via sampled-data control, Neural
Computing and Applications, 27(2): 447-457, 2016. PDF

[P84]
V. Ginting, **G. Lin**, J. Liu, On Application of the Weak Galerkin Finite Element
Method to a Two-phase Model for Subsurface Flow, Journal of Scientific
Computing, 66(1): 225-239, 2016. PDF

**(2) 14 Submitted Papers
in Refereed Journals**

[P85]
Z. Hao, M. Park, **G. Lin**, Z. Cai, Finite element method
for two-sided fractional elliptic differential equations with variable
coefficients: Galerkin approach, SIAM Journal on Scientific Computing, in
review, 2016.

[P86]
J. Zhang, W. Li, **G. Lin**, L. Zeng, L. Wu, Efficient
evaluation of small failure probability in high-dimensional groundwater
contaminant transport modeling via a two-stage Monte Carlo method, *Water Resources Research*, in review,
2016.

[P87]
W. Hao, **G. Lin**, Z. Xu, Numerical Study of
High-Dimensional Stoichiometric Biological Network, BMC Systems Biology, in
review, 2016.

[P88]
Y. Zheng, **G. Lin**, J. Glasser, A. Hill, Assessing
the effects of mildly symptomatic and asymptomatic Ebola infection on
propagation and control interventions, Journal of Theoretical Biology, in
review, 2016.

[P89]
Z. Hao, **G. Lin***, Implicit finite difference
schemes for multi-term time-fractional mixed diffusion-wave equations, Applied
Mathematics and Computation, in review.

[P90]
S. Wang, S. Lu,
Y. Zhang, **G. Lin**, Investigating
demand response contribution to frequency recovery during contingencies, IEEE
Transactions on Smart Grid, in review.

[P91]
G. Karagiannis, **G. Lin***, On the design of a predictive
model of computer model mixtures and their calibration through experimental
data, Technometrics, in review.

[P92]
L. Chen, B.
Zheng, **G. Lin***, N. Voulgarakis, A two-level stochastic collocation method for semilinear
elliptic equations with random coefficients, Journal of Computational and
Applied Mathematics, in review.

[P93]
R. N.
Ibragimov, **G. Lin**, Nonlinear
Analysis of Perturbed Rotating Whirlpools in the Ocean and Atmosphere, *Physics Letters A*, in review.

[P94]
E. Hogan, E.
Cotilla-Sanchez, M. Halappanavar, Z. Huang, **G. Lin**, S. Lu, S. Wang, Comparative Studies of Clustering
Techniques for Real-Time Dynamic Model Reduction, *IEEE transactions on smart grids*, in review.

[P95]
X. Wan, B. Zheng,
**G. Lin**, The hp-adaptivity of minimum
action method, *SIAM Journal of Scientific
Computing*, in review.

[P96]
B. Zheng, **G. Lin**, J. Xu, Block Triangular
Preconditioning for Stochastic Galerkin Method, *Journal of Scientific Computing*, in review.

[P97]
L. Wu, **G. Lin**, X. Li, The Mori-Zwanzig
formalism for coarse-graining molecular dynamics models: A quasi-harmonic
approximation, *Journal of Physics A:
Mathematical and Theoretical*, in review.

[P98]
J. Zhang, W. Li, G. Lin, L. Zeng, L. Wu,
Ensemble-based monitoring network design for contaminant source identification,
Water Resources Research, in review。

**24 Fully Reviewed
Conference Papers**

[C1] **G. Lin** and G.E. Karniadakis, A high-order discontinuous Galerkin method for modeling micro-pulsed plasma thrusters,
IEPC-01-154, *27th International Electric
Propulsion Conference*, October 2001, Pasadena, CA. PDF

[C2] **G. Lin** and G.E. Karniadakis, High-order modeling of micro-pulsed
plasma thrusters, AIAA-2002-2872, *3rd
AIAA Theoretical Fluid Mechanics Meeting*, June 2002, St. Louis, Missouri. PDF

[C3] **G. Lin**, C.-H. Su and G.E. Karniadakis, Stochastic solvers for the Euler
equations, AIAA-2005-0873, *43rd AIAA
Aerospace Sciences Meeting and Exhibit*, January 2005, Reno, NV. PDF

[C4] **G. Lin**, C.-H. Su and G.E. Karniadakis, Modeling random roughness
in supersonic flow past a wedge, AIAA-2006-0124, *44th AIAA Aerospace Sciences Meeting and Exhibit*, January 2006,
Reno, NV.

[C5] **G. Lin**, C.-H. Su and G.E. Karniadakis, Effects of Random
Roughness and Scattering of Shock Waves, AIAA 2007-1134, *45th AIAA Aerospace Sciences Meeting and
Exhibit*, January 2007, Reno, NV.

[C6] **G. Lin**, C.-H. Su and G.E. Karniadakis, Stochastic simulations
and sensitivity analysis of plasma flow, AIAA-2008-1073, *46h AIAA Aerospace Sciences Meeting and
Exhibit*, January 2008, Reno, NV.

[C7] Yin J, **G. Lin**,
I Gorton, B. Han, MeDiCi-Cloud:
A Workflow Infrastructure for Large-scale Scientific Applications, In 2011
Fourth IEEE International Conference on Utility and Cloud Computing (UCC),
Dec. 5-8, 2011, Victoria, NSW, 336 - 337, DOI: 10.1109/UCC.2011.56.
ISBN: 978-1-4577-2116-8, 2011. PDF

[C8] D.C. Miller, M. Syamlal, J.C. Meza, D.L. Brown, M.M. Fox,
M.A. Khaleel, R.K. Cottrell, J.D. Kress, X. Sun, S. Sundaresan, N.V. Sahinidis,
S.E. Zitney, D.A Agarwal, C. Tong, **G.
Lin**, B.C. Letellier, D.W. Engel, P. Calafiura, G.A. Richards, J.H. Shinn, Overview of the U.S. DOEs Carbon Capture Simulation
Initiative for Accelerating the Commercialization of CCS Technology, *36th International Technical Conference on** **Clean Coal
& Fuel Systems*, June 5 to 9, 2011, Clearwater, FL. PDF

[C9] **G. Lin**, N. Zhou, T. Ferryman, and F. Tuffner,
Uncertainty Quantification in State
Estimation using the Probabilistic Collocation Method, *Power Systems Conference and Exposition*, March 20th, 2011, Phoenix,
AZ. PDF

[C10]
T. Ferryman, F.
Tuffner, N. Zhou, and **G. Lin**, Initial Study on the Predictability of Real
Power on the Grid based on PMU Data, *Power
Systems Conference and Exposition*, March 20th, 2011, Phoenix, AZ. PDF

[C11]
TA Ferryman, DJ
Haglin, M Vlachopoulou, J Yin, C Shen, N Zhou, **G Lin**, FK Tuffner, and J Tong. Net Interchange Schedule Forecasting of
Electric Power Exchange for RTO/ISOs, *2012
IEEE PES General meeting*, July 22-26, 2012, San Diego, CA. PDF

[C12]
D Meng, N Zhou, S
Lu, and **G Lin**. Estimate the Electromechanical States Using
Particle Filtering and Smoothing, *2012
IEEE PES General meeting*, July 22-26, 2012, San Diego, CA. PDF

[C13]
S Wang, S Lu, **G Lin**, and N Zhou. Measurement-based Coherency Identification
and Aggregation for Power Systems, *2012
IEEE PES General meeting*, July 22-26, 2012, San Diego, CA. PDF

[C14]
D. Meng, **G. Lin**, M. Sushko, An Efficient Implementation of Multiscale
Simulation Software PNP-cDFT, *2012
MRS Spring Meeting proceedings*, 2012, San Francisco, CA. PDF

[C15]
J.B. Coble, **G. Lin**, B. Shumaker, P. Ramuhalli, Accurate
Uncertainty Quantification to Support Online Sensor Calibration Monitoring,
*2013 American Nuclear Society Winter
Meeting and Technology Expo.*, 2013.

[C16]
D. Meng, N. Zhou,
S. Lu, **G. Lin**, An Expectation-Maximization Method for
Calibrating Synchronous Machine Models, *2013
IEEE PES General meeting*, July 21-25, 2013, Vancouver, BC, Canada. PDF

[C17]
J. Yin, **G. Lin**, Exploring Cloud Computing for Large-scale
Scientific Applications, *IEEE 2013
International Workshop on the Future of Software Engineering for/in the Cloud
(FOSEC 2013)*, June 27-July 2, Santa Clara, CA. PDF

[C18]
J. Bao, Z. Hou,
Y. Fang, H. Ren, **G. Lin**, Uncertainty
quantification of geomechanical responses and risk
analysis of induced seismicity during geological CO2 sequestration, *12th Annual Conference on Carbon Capture,
Utilization and Sequestration*, Pittsburgh, PA, 2013.

[C19]
S.K. White,
L.J. Gosink, C. Sivaramakrishnan, G.D. Black, S. Purohit, D.H. Bacon J. Hou, **G. Lin**, I. Gorton, A. Bonneville, Implementations of a Flexible Framework for
Managing Geologic Sequestration Modeling Projects, Energy Procedia, 37:
3971–3979, 2013. PDF

[C20]
Elizondo MA, S
Lu, **G Lin**, and S Wang, Dynamic Response of Large Wind Power Plant
Affected by Diverse Conditions at Individual Turbines, *In IEEE Power and Energy Society General meeting*, July 27-31, 2014,
National Harbor, MD, USA. PDF

[C21]
W. Li, D. Zhang, **G. Lin**, A
surrogate-based adaptive sampling approach for history matching and uncertainty
quantification, SPE Reservoir Simulation Symposium, SPE 173298, Houston,
Texas, Feb. 23-25, USA, 2015. PDF

[C22]
L. Chen, Y. Cao, **G. Lin**, W. Sun, W. Zhang, P. Ming, Study on the simulation method of compressor
aerodynamic noise based on CFD and IBEM, Proceedings of the ASME 2016
Internal Combustion Fall Technical Conference, in review, Greenville, SC, Oct.
9-12, 2016. PDF

[C23]
J. Wang, X. Liu,
H. Shen, **G. Lin**, Multi-resolution Climate Ensemble parameter
analysis with nested parallel coordinates plots, IEEE VIS Conference, Visual Analytics Science and Technology program
(VAST), Oct. 23-28, 2016, Baltimore, MD, USA. PDF

[C24]
A. Biswas, **G. Lin**, X. Liu, H. Shen, Visualization of
Time-Varying Weather Ensembles Across Multiple Resolutions, IEEE VIS
Conference, Scientific Visualization program (SciVis), Oct. 23-28, 2016,
Baltimore, MD, USA. PDF

[R1] **G. Lin**, DW Engel, and PW Eslinger. Survey and Evaluate Uncertainty
Quantification Methodologies PNNL-20914, Pacific Northwest National
Laboratory, Richland, WA, 2012. PDF

[R2] CH Henager, Jr., F Gao, SY Hu,** G Lin**, EJ Bylaska, N Zabaras, Simulating interface growth and defect
generation in CZT-simulation state of the art and known gaps, PNNL-189638,
Pacific Northwest National Laboratory, Richland, WA, 2012. PDF

[R3] P. Ramuhalli, **G.
Lin**, S.L. Crawford, B. Konomi, B.G. Braatz, J.B. Coble, B. Shumaker, H. Hashemian, Uncertainty
Quantification Techniques for Sensor Calibration Monitoring in Nuclear Power
Plants, 2013. PDF

[R4] N.A. Baker, G.E. Karniadakis, **G. Lin**, W. Pan, G.K. Schenter, 2013 Collaboratory
on Mathematics for Mesoscopic Modeling of Materials (CM4) Annual Report,
2013.

[R5] Ramuhalli P, **G.
Lin**, SL Crawford, BA Konomi, JB Coble, B Shumaker, and H Hashemian, Uncertainty
Quantification Techniques for Sensor Calibration Monitoring in Nuclear Power
Plants, 2014. PDF

**Selected 86 Invited Presentations in Past Eight
Years **** **

**2016**

[IT1]
Invited seminar at Department of Electric
Engineering, Southeast University, Nanjing, China, June 28, 2016.

[IT2]
Invited seminar at Department of Mathematics,
Nanjing Information Engineering University, Nanjing, China, June 27, 2016.

[IT3]
Invited seminar at Institute of Information Science,
ShanghaiTech University, Shanghai, China, June 25,
2016.

[IT4]
Invited seminar at Department of Mathematics,
Zhejiang University, Hangzhou, China, June 22, 2016.

[IT5]
Invited talk at Workshop on Modeling and Analysis in
Molecular Biology and Electrophysiology, Suzhou, China, June 17, 2016.

[IT6]
Invited seminar Invited seminar at Naritech Company, Nanjing, China, June 7, 2016.

[IT7]
Invited seminar at Department of Mechanical
Engineering, Southeast University, Nanjing, China, June 6, 2016.

[IT8]
Invited
talk at the International Conference on Applied Mathematics 2016 at CityU, Hong Kong, May 30-June 2, 2016.

[IT9] Invited
seminar at Department
of Mathematics, Michigan State University, East Lansing, MI, April 29, 2016.

**2015**

[IT10] Invited
seminar at
Department of Mathematics, Ohio State University, Columbus, OH, Dec. 3, 2015.

[IT11] Invited
seminar at
Department of Mathematics, Ohio State University, Columbus, OH, Nov. 12, 2015.

[IT12] Invited
seminar at
Department of Mathematics, Penn State University, State College, PA, Oct. 26,
2015.

[IT13] Invited
seminar at Department of Mathematics, Indiana University–Purdue
University Indianapolis, Indianapolis, IN, Sep. 18, 2015.

[IT14] Invited
seminar at
Department of Statistics, University of Minnesota, Minneapolis, MN, Feb. 26.,
2015.

[IT15] Invited
seminar at
Science and Technology for Aquifer Recharge Workshop, Doha, Qatar, Feb. 9, 2015

**2014**

[IT16] Invited
seminar at Department of Mathematics Colloquium, Ohio State University,
Columbus, OH, Nov. 18, 2014.

[IT17] Invited
seminar at Southeast University, Nanjing, China, Nanjing, China on May 11,
2014.

**2013**

[IT18] Invited
seminar at Department of Mathematics, Shanghai University, China, Shanghai,
China on July 16, 2013.

[IT19] Invited
talk at Workshop on Scientific Computing with Applications, Kunming, China on
July 20, 2013.

[IT20]
Invited seminar at Southeast University, Nanjing,
China, Nanjing, China on July 25, 2013.

[IT21] Invited
seminar at Department of Mathematics, Colorado State University, Fort Collins,
CO on November 21, 2013.

[IT22] Invited
talk at IMA Hot Topics Workshop on Uncertainty Quantification in Materials
Modeling, Minneapolis, MN on December 16, 2013.

**2012**

[IT23] Invited
talk at the 2012 International workshop on Recent Advances in Scientific and
Engineering Computing, Shanghai, China, 2012.

[IT24]Invited
talk at the Second Workshop on Computational Methods for Applied Sciences at
Columbia University, New York City, Dec. 2, 2012.

[IT25] Invited
talk at the Computational Challenges in Probability Workshop: Uncertainty
Quantification, Providence, RI on October 9, 2012.

[IT26]Invited
seminar at the ACMS Colloquium at University of Notre Dame, Notre Dame, IN on
October 4, 2012.

[IT27] Invited
seminar at Applied and Computational Mathematics and Statistics, Univ. of Notre
Dame, Notre Dame, IN on October 4-5, 2012

[IT28]
Invited seminar at the Mechanics and Computation
Seminar Series at Stanford University, San Francisco, CA on September 27, 2012

[IT29]Invited
talk at the DOE Multifaceted Mathematics Center for Complex Energy Systems
Kick-off Meeting, ANL, Lemont, IL, September 13, 2012

[IT30]
Invited talk at the DOE Collaboratory
on Mathematics for Mesoscopic Modeling of Materials Kick-off Meeting, Seattle,
September 10, 2012.

[IT31] Invited talk at the 2012 DOE PNNL
Computational Sciences and Mathematics All Hands Meeting, Richland, WA, August
16, 2012.

[IT32] Invited
talk at the Carbon Sequestration Initiative Annual Review, Richland, WA, August
18, 2012.

[IT33] Invited
talk at the DOE ASCR Exascale Research Conference,
Portland, OR on April 17, 2012.

[IT34] Invited
seminar at Beijing Computational Science Research Center, Beijing, China on May
21, 2012.

[IT35] Invited
Seminar at the State Key Laboratory of Scientific and Engineering Computing,
Beijing, China on May 21, 2012.

[IT36] Invited seminar at the Second International
Conference on Scientific Computing, Nanjing, China on May 24, 2012.

[IT37] Invited seminar at the conference on
“Challenges in Geometry, Analysis, and Computation: High-Dimensional
Synthesis”, New Haven, CT, 2012.

[IT38]
Invited talk at the 2012 Joint CMSD/CSMD session on
PNNL FCSD Directorate Advisory Committee Meeting in Richland, WA, June 12,
2012.

[IT39] Invited
talk at the Joint Session CSMD and CMSD Material Genome, Directorate Advisory
Committee Meeting, Richland, WA, June 12, 2012.

[IT40]
Invited poster at the FCSD Joint Poster Session,
Directorate Advisory Committee Meeting, Richland, WA, June 12, 2012.

[IT41] Invited
seminar in Department of Mathematics at Univ. of South Carolina, Columbia, SC
on April 6, 2012.

[IT42]Invited
seminar in Department of Mathematics at Louisiana State University, Baton
Rouge, LA, March 13, 2012.

[IT43] Invited
seminar at the Undergraduate Mathematical Sciences Seminar at University of
Washington, Feb. 16, 2012, Seattle, WA.

[IT44]Invited talk at
the 1st CESM UQ and Analysis Interest Group Meeting, Jan 31, 2012, Boulder, WA.

**2011**

[IT45] Invited
talk at the 1st Sim-SEQ Workshop, San Francisco, CA on December 6, 2011.

[IT46]Invited seminar
at the Society of Petroleum Engineering Golden Gate Section Distinguished
Lecture, San Francisco, CA on December 8, 2011

[IT47] Invited
seminar at the Seminar in Aeronautics & Astronautics Department, University
of Washington, Dec. 2, 2011, Seattle, WA.

[IT48]
Invited seminar at the Department of Applied
Mathematics Colloquium, Penn. State University, Nov. 4, 2011, University Park,
PA.

[IT49]Invited
seminar at the Department of Applied Mathematics Pizza Seminar, Penn. State
University, Nov. 4, 2011, University Park, PA.

[IT50]Invited
seminar 1 at the 2011 DOE Applied Math Program PI Meeting, October 17-19, Washington
D.C.

[IT51] Invited
seminar 2 at the 2011 DOE Applied Math Program PI Meeting, October 17-19,
Washington D.C.

[IT52] Invited
talk at the 2011 DOE Climate PI Meeting, September 19-22, Washington D.C.

[IT53] Invited
talk “Uncertainty Quantification for CCSI”, at the 2011 Carbon Capture
Simulation Initiative Industry Workshop, September 26-28, 2011, Morgantown, WV.

[IT54] Invited
talk “Uncertainty Quantification Methods and Software for Carbon Capture
Simulation”, at the 2011 Carbon Capture Simulation Initiative Industry Workshop,
September 26-28, Morgantown, WV.

[IT55] Invited
talk “A Software System for Uncertainty Quantification and its Application to
the CCSI MEA Process Model”, at the 2011 Carbon Capture Simulation Initiative
Industry Workshop, September 26-28, Morgantown, WV.

[IT56] Invited
talk “Solid Sorbent Simulation: Early Development and UQ Evaluation Tools”, at
the 2011 Carbon Capture Simulation Initiative Industry Workshop, September
26-28, Morgantown, WV.

[IT57] Invited
seminar at the Department of Mathematics, Colorado State University, July 15,
2011, Fort Collins, Colorado.

[IT58]Invited
poster at the Department of Energy SciDAC 2011 PI
meeting, July 10-14 2011, Denver, Colorado.

[IT59] Invited
talk at the “Uncertainty Quantification in Computational Fluid Dynamics”
invited session, 20th AIAA Computational Fluid Dynamics Conference, Honolulu,
Hawaii, June 27-30, 2011.

[IT60]
Invited talk at the workshop "Uncertainty
Quantification in Industrial and Energy Applications: Experiences and
Challenges", June 2-4 2011, at the Institute for Mathematics and its
Applications (IMA) in Minneapolis, MN.

[IT61] Invited
seminar at the Applied and Computational Mathematics Seminar, California
Technology Institute, May 9th 2011, Pasadena, CA.

[IT62]Invited
seminar at Applied Mathematics Colloquium, University of Washington, April 21
2011, Seattle, WA.

[IT63] Invited
talk at the IAMCS Workshop in Large-Scale Inverse Problems and Uncertainty
Quantification, February 25th, 2011, Texas A&M University, College Station,
Texas.

[IT64]Invited
seminar at the Petroleum Engineering Department Colloquium, Colorado School of
Mines, February 11th, 2011, Golden, Colorado.

[IT65] Invited
seminar in the Mathematics Department at University of North Carolina
Charlotte, Charlotte, NC on February 7, 2011.

**2010**

[IT66]Invited
seminar at the Division of Applied Mathematics, Brown University, December
17th, 2010, Providence, RI.

[IT67] Invited
seminar at the Department of Mathematics Colloquium, Iowa State University,
December 7th, 2010, Ames, IA.

[IT68]
Invited seminar at the Department of Civil
Engineering, University of Southern California, December 1th, 2010, Los
Angeles, CA.

[IT69]Invited
seminar at the Department of Applied Mathematics, University of Washington,
November 22nd, 2010, Seattle, WA.

[IT70] Invited
talk at the "Mapping Out Future Directions for Uncertainty Quantification
in Scientific Inference" conference, November 5, 2010, Santa Fe, NM.

[IT71] Invited
seminar at the Department of Department of Applied Mathematics, SUNY Stony
Brook University, September 8th, 2010, Stony Brook, NY.

[IT72] Invited
talk at the FY 2011 Nuclear Energy University Programs Workshop, July 27-28,
2010, Rockville, MD.

[IT73] Invited
talk at CMSD Division Advisory Committee Meeting, June 15th, 2010, Richland, WA

[IT74] Invited
talk at CSM Division Advisory Committee Meeting, June 15th, 2010, Richland, WA

[IT75] Invited
seminar at the PNNL Brown Bag Seminar, May 27, 2010, Richland, WA.

[IT76] Invited
talk at the 2010 DOE Applied Mathematics Program Meeting, May 4, 2010,
Berkeley, CA.

**2009**

[IT77] Invited
seminar at the Aerospace computational design lab, MIT, December 4th, 2009,
Boston, MA.

[IT78] Invited
talk at Princeton
Plasma Physics Laboratory, November 30th, 2009, Princeton, NJ.

[IT79] Invited
talk at the Mini-Symposium on Uncertainty Quantification in Simulations of
Fluid Flow, Presented at the 62nd Annual Meeting of the APS Division of Fluid
Dynamics, November 22nd, 2009, Minneapolis, Minnesota.

[IT80]
Invited talk at the Real-time Model Validation and
Calibration (RTMV) kick-off meeting, November 11th, 2009, Richland, WA.

[IT81]
Invited talk at DOE ASCR Applied Math Program’ PNNL
visit, September 2nd, 2009, Richland, WA.

[IT82]
Invited seminar at the Applied Mathematics
Colloquium, in the Department of Applied Mathematics, University of Washington,
March 12th 2009, Seattle, WA.

**2008**

[IT83]
Invited seminar at the PNNL CSM Development Brown
Bag, Dec. 18th, 2008, Richland, WA.

[IT84]
Invited seminar at the Center for Applied
Mathematics Colloquium, University of Notre Dame, November 10th, 2008, Notre
Dame, IN.

[IT85]Invited
seminar at the 2008 DOE Summer School in Multiscale Mathematics and High
Performance Computing, Washington State University-Tri-Cities, August 5th,
Richland, WA.

[IT86]
Invited graduate seminar in the Department of
Aeronautics & Astronautics, University of Washington, January 18th, 2008,
Seattle, WA.