We study a Fourier-spectral method for a dissipative system modeling the flow of liquid crystals. We first prove its convergence in a suitable sense, and establish the existence of global week solution of the original problem and its uniqueness in the two dimensional case. Then, we derive error estimates which exhibit the spectral accuracy of the Fourier-spectral method. We also construct a fully discrete scheme and carry out a complete stability and error analysis for it. Finally, we present some illustrative numerical results.