Contents
Section I: Model Infrastructure
The implications of spatial structure within populations to the evolution of parasites
Mike Boots, Masashi Kamo, and Akira Sasaki
Insights from Price's equation into evolutionary epidemiology
Troy Day and Sylvain Gandon
Within-host pathogen dynamics: Some ecological and evolutionary consequences of transients, dispersal mode, and within-host spatial heterogeneity
Robert D. Holt and Michael Barfield
Evolutionary and dynamic models of infection with internal host structure
John K. Kelly
Basic methods for modeling the invasion and spread of contagious diseases
Wayne M. Getz and James O. Lloyd-Smith
Section II: Applications to Specific Diseases
Modeling the invasion and spread of contagious diseases in heterogeneous populations
Wayne M. Getz, James O. Lloyd-Smith, Paul C. Cross, Shirli Bar-David, Philip L. Johnson, Travis C. Porco, and Maria S. Sanchez
A cophylogenetic perspective on host-pathogen evolution
Michael A. Charleston and Alison P. Galvani
The influence of anti-viral drug therapy on the evolution of HIV-1 pathogens
Zhilan Feng and Libin Rong
Do rhinoviruses follow the neutral theory? The role of cross-immunity in maintaining the diversity of the common cold
William J. Koppelman and Frederick R. Adler
Drug resistance in acute viral infections: rhinovirus as a case study
Alun L. Lloyd and Dominik Wodarz
Dynamics and control of antibiotic resistance in structured metapopulations
David L. Smith, Maciej F. Boni, and Ramanan Laxminarayan